Universal primer cocktails for fish DNA barcoding

NV Ivanova, TS Zemlak, RH Hanner…�- Molecular Ecology�…, 2007 - Wiley Online Library
Molecular Ecology Notes, 2007Wiley Online Library
Reliable recovery of the 5′ region of the cytochrome c oxidase 1 (COI) gene is critical for
the ongoing effort to gather DNA barcodes for all fish species. In this study, we develop and
test primer cocktails with a view towards increasing the efficiency of barcode recovery.
Specifically, we evaluate the success of polymerase chain reaction amplification and the
quality of resultant sequences using three primer cocktails on DNA extracts from
representatives of 94 fish families. Our results show that M13‐tailed primer cocktails are�…
Abstract
Reliable recovery of the 5′ region of the cytochrome c oxidase 1 (COI) gene is critical for the ongoing effort to gather DNA barcodes for all fish species. In this study, we develop and test primer cocktails with a view towards increasing the efficiency of barcode recovery. Specifically, we evaluate the success of polymerase chain reaction amplification and the quality of resultant sequences using three primer cocktails on DNA extracts from representatives of 94 fish families. Our results show that M13‐tailed primer cocktails are more effective than conventional degenerate primers, allowing barcode work on taxonomically diverse samples to be carried out in a high‐throughput fashion.
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